Note
Click here to download the full example code
Surface annotator (library)
An example controlling the surface annotator, using napari-threedee as a library.
import napari
from skimage import data
import napari_threedee as n3d
# create napari viewer
viewer = napari.Viewer(ndisplay=3)
# generate 3d image data
blobs = data.binary_blobs(length=64, volume_fraction=0.1, n_dim=3).astype(float)
# add image layer to viewer (rendering as plane)
image_layer = viewer.add_image(
blobs,
name='orange plane',
rendering='average',
colormap='bop orange',
blending='translucent',
opacity=0.5,
depiction='plane',
plane={
'position': (32, 32, 32),
'normal': (1, 0, 0),
'thickness': 10,
})
# create annotator
annotator = n3d.annotators.SurfaceAnnotator(
viewer=viewer, image_layer=image_layer, enabled=True
)
# run napari
viewer.layers.selection = [image_layer]
viewer.axes.visible = True
viewer.axes.labels = False
viewer.camera.angles = (-15, 25, -30)
viewer.camera.zoom *= 0.5
napari.run()
Total running time of the script: ( 0 minutes 2.590 seconds)
Download Python source code: surface_annotator_library.py