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Click here to download the full example code
Drawing labels on a plane (plugin)
An example drawing labels on a rendering plane using the label annotator plugin.
import napari
import numpy as np
from skimage import data
viewer = napari.Viewer(ndisplay=3)
# add a volume
blobs = data.binary_blobs(
length=64, volume_fraction=0.1, n_dim=3
).astype(np.float32)
# add the image layer in plane depiction mode
plane_layer = viewer.add_image(
blobs,
rendering='mip',
colormap="cyan",
name='plane',
depiction='plane',
opacity=0.5,
plane={'position': (32, 32, 32), 'normal': (1, 1, 1), 'thickness': 10}
)
# add a labels layer
labels_layer = viewer.add_labels(
np.zeros_like(blobs).astype(int)
)
labels_layer.n_edit_dimensions = 3
viewer.window.add_plugin_dock_widget(
"napari-threedee", widget_name="label annotator"
)
napari.run()
Total running time of the script: ( 0 minutes 4.228 seconds)
Download Python source code: plane_labeler_plugin.py