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Click here to download the full example code
Sphere annotator (plugin)
An example controlling the sphere annotator, using napari-threedee as a napari plugin.
import napari
from skimage import data
# create napari viewer
viewer = napari.Viewer(ndisplay=3)
# generate image data
blobs = data.binary_blobs(length=64, volume_fraction=0.1, n_dim=3).astype(float)
# add two image layers to viewer
viewer.add_image(
blobs,
name='orange plane',
rendering='average',
colormap='bop orange',
blending='translucent',
opacity=0.5,
depiction='plane',
plane={
'position': (32, 32, 32),
'normal': (1, 0, 0),
'thickness': 10,
})
viewer.add_image(
blobs,
name='blue plane',
rendering='average',
colormap='bop blue',
blending='additive',
opacity=0.5,
depiction='plane',
plane={
'position': (32, 32, 32),
'normal': (0, 1, 0),
'thickness': 10,
})
# add plugin dock widget to viewer
viewer.window.add_plugin_dock_widget(
plugin_name="napari-threedee", widget_name="sphere annotator"
)
# run napari
viewer.layers.selection = [viewer.layers[0]]
viewer.axes.visible = True
viewer.camera.angles = (-15, 25, -30)
viewer.camera.zoom *= 0.5
napari.run()
Total running time of the script: ( 0 minutes 1.527 seconds)
Download Python source code: sphere_annotator_plugin.py